Image and Fractal Information Processing for Large-Scale Chemoinformatics, Genomics Analyses and Pattern Discovery
Identifieur interne : 002E27 ( Main/Exploration ); précédent : 002E26; suivant : 002E28Image and Fractal Information Processing for Large-Scale Chemoinformatics, Genomics Analyses and Pattern Discovery
Auteurs : Ilkka Havukkala [Nouvelle-Zélande] ; Lubica Benuskova [Nouvelle-Zélande] ; Shaoning Pang [Nouvelle-Zélande] ; Vishal Jain [Nouvelle-Zélande] ; Rene Kroon [Nouvelle-Zélande] ; Nikola Kasabov [Nouvelle-Zélande]Source :
- Lecture Notes in Computer Science [ 0302-9743 ]
Abstract
Abstract: Two promising approaches for handling large-scale biodata are presented and illustrated in several new contexts: molecular structure bitmap image processing for chemoinformatics, and fractal visualization methods for genome analyses. It is suggested that two-dimensional structure databases of bioactive molecules (e.g. proteins, drugs, folded RNAs), transformed to bitmap image databases, can be analysed by a variety of image processing methods, with an example of human microRNA folded 2D structures processed by Gabor filter. Another compact and efficient visualization method is comparison of huge amounts of genomic and proteomic data through fractal representation, with an example of analyzing oligomer frequencies in a bacterial phytoplasma genome. Bitmap visualization of bioinformatics data seems promising for complex parallel pattern discovery and large-scale genome comparisons, as powerful modern image processing methods can be applied to the 2D images.
Url:
DOI: 10.1007/11818564_18
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Istex, to step Corpus: 000905
- to stream Istex, to step Curation: 000905
- to stream Istex, to step Checkpoint: 000A02
- to stream Main, to step Merge: 002E57
- to stream Main, to step Curation: 002E27
Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Image and Fractal Information Processing for Large-Scale Chemoinformatics, Genomics Analyses and Pattern Discovery</title><author><name sortKey="Havukkala, Ilkka" sort="Havukkala, Ilkka" uniqKey="Havukkala I" first="Ilkka" last="Havukkala">Ilkka Havukkala</name></author><author><name sortKey="Benuskova, Lubica" sort="Benuskova, Lubica" uniqKey="Benuskova L" first="Lubica" last="Benuskova">Lubica Benuskova</name></author><author><name sortKey="Pang, Shaoning" sort="Pang, Shaoning" uniqKey="Pang S" first="Shaoning" last="Pang">Shaoning Pang</name></author><author><name sortKey="Jain, Vishal" sort="Jain, Vishal" uniqKey="Jain V" first="Vishal" last="Jain">Vishal Jain</name></author><author><name sortKey="Kroon, Rene" sort="Kroon, Rene" uniqKey="Kroon R" first="Rene" last="Kroon">Rene Kroon</name></author><author><name sortKey="Kasabov, Nikola" sort="Kasabov, Nikola" uniqKey="Kasabov N" first="Nikola" last="Kasabov">Nikola Kasabov</name></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:CFF258603E79ABEA2F1D8CAB544098CA52602403</idno><date when="2006" year="2006">2006</date><idno type="doi">10.1007/11818564_18</idno><idno type="url">https://api.istex.fr/ark:/67375/HCB-7W012CRW-C/fulltext.pdf</idno><idno type="wicri:Area/Istex/Corpus">000905</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000905</idno><idno type="wicri:Area/Istex/Curation">000905</idno><idno type="wicri:Area/Istex/Checkpoint">000A02</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">000A02</idno><idno type="wicri:doubleKey">0302-9743:2006:Havukkala I:image:and:fractal</idno><idno type="wicri:Area/Main/Merge">002E57</idno><idno type="wicri:Area/Main/Curation">002E27</idno><idno type="wicri:Area/Main/Exploration">002E27</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Image and Fractal Information Processing for Large-Scale Chemoinformatics, Genomics Analyses and Pattern Discovery</title><author><name sortKey="Havukkala, Ilkka" sort="Havukkala, Ilkka" uniqKey="Havukkala I" first="Ilkka" last="Havukkala">Ilkka Havukkala</name><affiliation wicri:level="1"><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Knowledge Engineering and Discovery Research Institute, Auckland University of Technology, Auckland</wicri:regionArea><wicri:noRegion>Auckland</wicri:noRegion></affiliation><affiliation wicri:level="1"><country wicri:rule="url">Nouvelle-Zélande</country></affiliation></author><author><name sortKey="Benuskova, Lubica" sort="Benuskova, Lubica" uniqKey="Benuskova L" first="Lubica" last="Benuskova">Lubica Benuskova</name><affiliation wicri:level="1"><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Knowledge Engineering and Discovery Research Institute, Auckland University of Technology, Auckland</wicri:regionArea><wicri:noRegion>Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Pang, Shaoning" sort="Pang, Shaoning" uniqKey="Pang S" first="Shaoning" last="Pang">Shaoning Pang</name><affiliation wicri:level="1"><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Knowledge Engineering and Discovery Research Institute, Auckland University of Technology, Auckland</wicri:regionArea><wicri:noRegion>Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Jain, Vishal" sort="Jain, Vishal" uniqKey="Jain V" first="Vishal" last="Jain">Vishal Jain</name><affiliation wicri:level="1"><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Knowledge Engineering and Discovery Research Institute, Auckland University of Technology, Auckland</wicri:regionArea><wicri:noRegion>Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Kroon, Rene" sort="Kroon, Rene" uniqKey="Kroon R" first="Rene" last="Kroon">Rene Kroon</name><affiliation wicri:level="1"><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Knowledge Engineering and Discovery Research Institute, Auckland University of Technology, Auckland</wicri:regionArea><wicri:noRegion>Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Kasabov, Nikola" sort="Kasabov, Nikola" uniqKey="Kasabov N" first="Nikola" last="Kasabov">Nikola Kasabov</name><affiliation wicri:level="1"><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>Knowledge Engineering and Discovery Research Institute, Auckland University of Technology, Auckland</wicri:regionArea><wicri:noRegion>Auckland</wicri:noRegion></affiliation></author></analytic><monogr></monogr><series><title level="s" type="main" xml:lang="en">Lecture Notes in Computer Science</title><idno type="ISSN">0302-9743</idno><idno type="eISSN">1611-3349</idno><idno type="ISSN">0302-9743</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0302-9743</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Abstract: Two promising approaches for handling large-scale biodata are presented and illustrated in several new contexts: molecular structure bitmap image processing for chemoinformatics, and fractal visualization methods for genome analyses. It is suggested that two-dimensional structure databases of bioactive molecules (e.g. proteins, drugs, folded RNAs), transformed to bitmap image databases, can be analysed by a variety of image processing methods, with an example of human microRNA folded 2D structures processed by Gabor filter. Another compact and efficient visualization method is comparison of huge amounts of genomic and proteomic data through fractal representation, with an example of analyzing oligomer frequencies in a bacterial phytoplasma genome. Bitmap visualization of bioinformatics data seems promising for complex parallel pattern discovery and large-scale genome comparisons, as powerful modern image processing methods can be applied to the 2D images.</div></front></TEI><affiliations><list><country><li>Nouvelle-Zélande</li></country></list><tree><country name="Nouvelle-Zélande"><noRegion><name sortKey="Havukkala, Ilkka" sort="Havukkala, Ilkka" uniqKey="Havukkala I" first="Ilkka" last="Havukkala">Ilkka Havukkala</name></noRegion><name sortKey="Benuskova, Lubica" sort="Benuskova, Lubica" uniqKey="Benuskova L" first="Lubica" last="Benuskova">Lubica Benuskova</name><name sortKey="Havukkala, Ilkka" sort="Havukkala, Ilkka" uniqKey="Havukkala I" first="Ilkka" last="Havukkala">Ilkka Havukkala</name><name sortKey="Jain, Vishal" sort="Jain, Vishal" uniqKey="Jain V" first="Vishal" last="Jain">Vishal Jain</name><name sortKey="Kasabov, Nikola" sort="Kasabov, Nikola" uniqKey="Kasabov N" first="Nikola" last="Kasabov">Nikola Kasabov</name><name sortKey="Kroon, Rene" sort="Kroon, Rene" uniqKey="Kroon R" first="Rene" last="Kroon">Rene Kroon</name><name sortKey="Pang, Shaoning" sort="Pang, Shaoning" uniqKey="Pang S" first="Shaoning" last="Pang">Shaoning Pang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MersV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002E27 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 002E27 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= MersV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= ISTEX:CFF258603E79ABEA2F1D8CAB544098CA52602403
|texte= Image and Fractal Information Processing for Large-Scale Chemoinformatics, Genomics Analyses and Pattern Discovery
}}
| This area was generated with Dilib version V0.6.33. |  |